[mlpack-git] [mlpack/mlpack] NeuralEvolution - implemented gene, genome (#686)

[Excalibur]

This PR implements the concepts in NE algorithms by classes.
The finished classes (for current CNE algorithm) includes:
LinkGene
NeuronGene
Genome

Classes in progress includes:
Population
CNE 
You can view, comment on, or merge this pull request online at:

  https://github.com/mlpack/mlpack/pull/686

-- Commit Summary --

  * change .gitignore to ignore .DS_Store
  * create gene.hpp, add ne_test.cpp, and created or modified multiple CMakeLists.txt.
  * Created gene.happ, add tests and changed or created CMakeLists.txt
  * Add aDepth to NeuronGene.
  * implement CNE, haven't finish.
  * delete blank files
  * finished genome.hpp, revised gene.hpp
  * modified gene.hpp

-- File Changes --

    M .gitignore (2)
    M src/mlpack/methods/CMakeLists.txt (1)
    A src/mlpack/methods/ne/CMakeLists.txt (14)
    A src/mlpack/methods/ne/cne.hpp (77)
    A src/mlpack/methods/ne/gene.hpp (186)
    A src/mlpack/methods/ne/genome.hpp (304)
    A src/mlpack/methods/ne/ne_main.cpp (0)
    A src/mlpack/methods/ne/population.hpp (55)
    A src/mlpack/methods/ne/utils.hpp (29)
    M src/mlpack/tests/CMakeLists.txt (1)
    A src/mlpack/tests/ne_test.cpp (79)

-- Patch Links --

https://github.com/mlpack/mlpack/pull/686.patch
https://github.com/mlpack/mlpack/pull/686.diff

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