<p>This PR implements the concepts in NE algorithms by classes.<br>
The finished classes (for current CNE algorithm) includes:<br>
LinkGene<br>
NeuronGene<br>
Genome</p>

<p>Classes in progress includes:<br>
Population<br>
CNE </p>

<hr>

<h4>You can view, comment on, or merge this pull request online at:</h4>
<p>&nbsp;&nbsp;<a href='https://github.com/mlpack/mlpack/pull/686'>https://github.com/mlpack/mlpack/pull/686</a></p>

<h4>Commit Summary</h4>
<ul>
  <li>change .gitignore to ignore .DS_Store</li>
  <li>create gene.hpp, add ne_test.cpp, and created or modified multiple CMakeLists.txt.</li>
  <li>Created gene.happ, add tests and changed or created CMakeLists.txt</li>
  <li>Add aDepth to NeuronGene.</li>
  <li>implement CNE, haven&#39;t finish.</li>
  <li>delete blank files</li>
  <li>finished genome.hpp, revised gene.hpp</li>
  <li>modified gene.hpp</li>
</ul>

<h4>File Changes</h4>
<ul>
  <li>
    <strong>M</strong>
    <a href="https://github.com/mlpack/mlpack/pull/686/files#diff-0">.gitignore</a>
    (2)
  </li>
  <li>
    <strong>M</strong>
    <a href="https://github.com/mlpack/mlpack/pull/686/files#diff-1">src/mlpack/methods/CMakeLists.txt</a>
    (1)
  </li>
  <li>
    <strong>A</strong>
    <a href="https://github.com/mlpack/mlpack/pull/686/files#diff-2">src/mlpack/methods/ne/CMakeLists.txt</a>
    (14)
  </li>
  <li>
    <strong>A</strong>
    <a href="https://github.com/mlpack/mlpack/pull/686/files#diff-3">src/mlpack/methods/ne/cne.hpp</a>
    (77)
  </li>
  <li>
    <strong>A</strong>
    <a href="https://github.com/mlpack/mlpack/pull/686/files#diff-4">src/mlpack/methods/ne/gene.hpp</a>
    (186)
  </li>
  <li>
    <strong>A</strong>
    <a href="https://github.com/mlpack/mlpack/pull/686/files#diff-5">src/mlpack/methods/ne/genome.hpp</a>
    (304)
  </li>
  <li>
    <strong>A</strong>
    <a href="https://github.com/mlpack/mlpack/pull/686/files#diff-6">src/mlpack/methods/ne/ne_main.cpp</a>
    (0)
  </li>
  <li>
    <strong>A</strong>
    <a href="https://github.com/mlpack/mlpack/pull/686/files#diff-7">src/mlpack/methods/ne/population.hpp</a>
    (55)
  </li>
  <li>
    <strong>A</strong>
    <a href="https://github.com/mlpack/mlpack/pull/686/files#diff-8">src/mlpack/methods/ne/utils.hpp</a>
    (29)
  </li>
  <li>
    <strong>M</strong>
    <a href="https://github.com/mlpack/mlpack/pull/686/files#diff-9">src/mlpack/tests/CMakeLists.txt</a>
    (1)
  </li>
  <li>
    <strong>A</strong>
    <a href="https://github.com/mlpack/mlpack/pull/686/files#diff-10">src/mlpack/tests/ne_test.cpp</a>
    (79)
  </li>
</ul>

<h4>Patch Links:</h4>
<ul>
  <li><a href='https://github.com/mlpack/mlpack/pull/686.patch'>https://github.com/mlpack/mlpack/pull/686.patch</a></li>
  <li><a href='https://github.com/mlpack/mlpack/pull/686.diff'>https://github.com/mlpack/mlpack/pull/686.diff</a></li>
</ul>

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