<p>Hello, </p>
<p>I want to build mlpack in HPC without root privilege, but I'm facing the following errors. Please advice.</p>
<p>25%] Linking CXX executable ../../../../bin/mlpack_preprocess_split<br>
cd /Users/cwang42/workspace/tools/mlpack-2.0.3/build/src/mlpack/methods/preprocess && /opt/cmake/3.4.3/bin/cmake -E cmake_link_script CMakeFiles/mlpack_preprocess_split.dir/link.txt --verbose=1<br>
/opt/gcc/6.1.0/bin/c++ -fext-numeric-literals -I/Users/cwang42/opt2/usr/include -std=c++0x -O3 -fopenmp -L/Users/cwang42/opt2/usr/lib64 CMakeFiles/mlpack_preprocess_split.dir/preprocess_split_main.cpp.o -o ../../../../bin/mlpack_preprocess_split -rdynamic ../../../../lib/libmlpack.so.2.0 -larmadillo -lboost_program_options-mt -lboost_unit_test_framework-mt -lboost_serialization-mt -lrt -Wl,-rpath,/Users/cwang42/workspace/tools/mlpack-2.0.3/build/lib: <br>
CMakeFiles/mlpack_preprocess_split.dir/preprocess_split_main.cpp.o: In function <code>boost::program_options::typed_value<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, char>::xparse(boost::any&, std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > const&) const':<br>
preprocess_split_main.cpp:(.text._ZNK5boost15program_options11typed_valueINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEcE6xparseERNS_3anyERKSt6vectorIS7_SaIS7_EE[_ZNK5boost15program_options11typed_valueINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEcE6xparseERNS_3anyERKSt6vectorIS7_SaIS7_EE]+0x19): undefined reference to</code>boost::program_options::validate(boost::any&, std::vector, std::allocator >, std::allocator, std::allocator > > > const&, std::__cxx11::basic_string, std::allocator ><em>, int)'<br>
CMakeFiles/mlpack_preprocess_split.dir/preprocess_split_main.cpp.o: In function <code>boost::program_options::validation_error::validation_error(boost::program_options::validation_error::kind_t, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, int)':<br>
preprocess_split_main.cpp:(.text._ZN5boost15program_options16validation_errorC2ENS1_6kind_tERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESA_i[_ZN5boost15program_options16validation_errorC5ENS1_6kind_tERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESA_i]+0x21): undefined reference to</code><em>ZN5boost15program_options16validation_error12get_templateB5cxx11ENS1_6kind_tE'<br>
preprocess_split_main.cpp:(.text._ZN5boost15program_options16validation_errorC2ENS1_6kind_tERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESA_i[_ZN5boost15program_options16validation_errorC5ENS1_6kind_tERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESA_i]+0x39): undefined reference to <code>boost::program_options::error_with_option_name::error_with_option_name(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, int)'<br>
CMakeFiles/mlpack_preprocess_split.dir/preprocess_split_main.cpp.o: In function</code>boost::program_options::error_with_option_name::~error_with_option_name()':<br>
preprocess_split_main.cpp:(.text._ZN5boost15program_options22error_with_option_nameD2Ev[_ZN5boost15program_options22error_with_option_nameD5Ev]+0x17): undefined reference to <code>vtable for boost::program_options::error_with_option_name'<br>
CMakeFiles/mlpack_preprocess_split.dir/preprocess_split_main.cpp.o: In function</code>void mlpack::data::Split(arma::Mat const&, arma::Row const&, arma::Mat&, arma::Mat&, arma::Row&, arma::Row&, double)':<br>
preprocess_split_main.cpp:(.text._ZN6mlpack4data5SplitIddEEvRKN4arma3MatIT_EERKNS2_3RowIT0_EERS5_SD_RSA_SE_d[_ZN6mlpack4data5SplitIddEEvRKN4arma3MatIT_EERKNS2_3RowIT0_EERS5_SD_RSA_SE_d]+0x2a2): undefined reference to <code>arma::arma_rng_cxx11_instance'<br>
preprocess_split_main.cpp:(.text._ZN6mlpack4data5SplitIddEEvRKN4arma3MatIT_EERKNS2_3RowIT0_EERS5_SD_RSA_SE_d[_ZN6mlpack4data5SplitIddEEvRKN4arma3MatIT_EERKNS2_3RowIT0_EERS5_SD_RSA_SE_d]+0x2d6): undefined reference to</code>arma::arma_rng_cxx11_instance'<br>
preprocess_split_main.cpp:(.text._ZN6mlpack4data5SplitIddEEvRKN4arma3MatIT_EERKNS2_3RowIT0_EERS5_SD_RSA_SE_d[_ZN6mlpack4data5SplitIddEEvRKN4arma3MatIT_EERKNS2_3RowIT0_EERS5_SD_RSA_SE_d]+0x307): undefined reference to <code>arma::arma_rng_cxx11_instance'<br>
preprocess_split_main.cpp:(.text._ZN6mlpack4data5SplitIddEEvRKN4arma3MatIT_EERKNS2_3RowIT0_EERS5_SD_RSA_SE_d[_ZN6mlpack4data5SplitIddEEvRKN4arma3MatIT_EERKNS2_3RowIT0_EERS5_SD_RSA_SE_d]+0x7c3): undefined reference to</code>arma::arma_rng_cxx11_instance'<br>
CMakeFiles/mlpack_preprocess_split.dir/preprocess_split_main.cpp.o: In function <code>void mlpack::data::Split<double>(arma::Mat<double> const&, arma::Mat<double>&, arma::Mat<double>&, double)':<br>
preprocess_split_main.cpp:(.text._ZN6mlpack4data5SplitIdEEvRKN4arma3MatIT_EERS5_S8_d[_ZN6mlpack4data5SplitIdEEvRKN4arma3MatIT_EERS5_S8_d]+0x262): undefined reference to</code>arma::arma_rng_cxx11_instance'<br>
CMakeFiles/mlpack_preprocess_split.dir/preprocess_split_main.cpp.o:preprocess_split_main.cpp:(.text._ZN6mlpack4data5SplitIdEEvRKN4arma3MatIT_EERS5_S8_d[_ZN6mlpack4data5SplitIdEEvRKN4arma3MatIT_EERS5_S8_d]+0x296): more undefined references to <code>arma::arma_rng_cxx11_instance' follow<br>
CMakeFiles/mlpack_preprocess_split.dir/preprocess_split_main.cpp.o: In function</code>_ZNK5boost15program_options11typed_valueINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEcE4nameB5cxx11Ev':<br>
preprocess_split_main.cpp:(.text._ZNK5boost15program_options11typed_valueINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEcE4nameB5cxx11Ev[_ZNK5boost15program_options11typed_valueINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEcE4nameB5cxx11Ev]+0xb): undefined reference to <code>_ZN5boost15program_options3argB5cxx11E'<br>
CMakeFiles/mlpack_preprocess_split.dir/preprocess_split_main.cpp.o: In function</code>_ZNK5boost15program_options11typed_valueIdcE4nameB5cxx11Ev':<br>
preprocess_split_main.cpp:(.text._ZNK5boost15program_options11typed_valueIdcE4nameB5cxx11Ev[_ZNK5boost15program_options11typed_valueIdcE4nameB5cxx11Ev]+0xb): undefined reference to <code>_ZN5boost15program_options3argB5cxx11E'<br>
CMakeFiles/mlpack_preprocess_split.dir/preprocess_split_main.cpp.o: In function</code>boost::program_options::error_with_option_name::error_with_option_name(boost::program_options::error_with_option_name const&)':<br>
preprocess_split_main.cpp:(.text._ZN5boost15program_options22error_with_option_nameC2ERKS1</em>[<em>ZN5boost15program_options22error_with_option_nameC5ERKS1</em>]+0x2d): undefined reference to <code>vtable for boost::program_options::error_with_option_name'<br>
CMakeFiles/mlpack_preprocess_split.dir/preprocess_split_main.cpp.o: In function</code>void boost::program_options::validate(boost::any&, std::vector, std::allocator >, std::allocator, std::allocator > > > const&, double</em>, long)':<br>
preprocess_split_main.cpp:(.text._ZN5boost15program_options8validateIdcEEvRNS_3anyERKSt6vectorINSt7__cxx1112basic_stringIT0_St11char_traitsIS7_ESaIS7_EEESaISB_EEPT_l[_ZN5boost15program_options8validateIdcEEvRNS_3anyERKSt6vectorINSt7__cxx1112basic_stringIT0_St11char_traitsIS7_ESaIS7_EEESaISB_EEPT_l]+0x4fc): undefined reference to <code>boost::program_options::invalid_option_value::invalid_option_value(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)'<br>
CMakeFiles/mlpack_preprocess_split.dir/preprocess_split_main.cpp.o:(.rodata._ZTVN5boost16exception_detail19error_info_injectorINS_15program_options20invalid_option_valueEEE[_ZTVN5boost16exception_detail19error_info_injectorINS_15program_options20invalid_option_valueEEE]+0x20): undefined reference to</code>boost::program_options::error_with_option_name::what() const'<br>
CMakeFiles/mlpack_preprocess_split.dir/preprocess_split_main.cpp.o:(.rodata._ZTVN5boost16exception_detail19error_info_injectorINS_15program_options20invalid_option_valueEEE[_ZTVN5boost16exception_detail19error_info_injectorINS_15program_options20invalid_option_valueEEE]+0x30): undefined reference to <code>boost::program_options::error_with_option_name::substitute_placeholders(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&) const'<br>
CMakeFiles/mlpack_preprocess_split.dir/preprocess_split_main.cpp.o:(.rodata._ZTVN5boost16exception_detail10clone_implINS0_19error_info_injectorINS_15program_options20invalid_option_valueEEEEE[_ZTVN5boost16exception_detail10clone_implINS0_19error_info_injectorINS_15program_options20invalid_option_valueEEEEE]+0x28): undefined reference to</code>boost::program_options::error_with_option_name::what() const'<br>
CMakeFiles/mlpack_preprocess_split.dir/preprocess_split_main.cpp.o:(.rodata._ZTVN5boost16exception_detail10clone_implINS0_19error_info_injectorINS_15program_options20invalid_option_valueEEEEE[_ZTVN5boost16exception_detail10clone_implINS0_19error_info_injectorINS_15program_options20invalid_option_valueEEEEE]+0x38): undefined reference to <code>boost::program_options::error_with_option_name::substitute_placeholders(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&) const'<br>
CMakeFiles/mlpack_preprocess_split.dir/preprocess_split_main.cpp.o:(.rodata._ZTVN5boost16exception_detail19error_info_injectorINS_15program_options16validation_errorEEE[_ZTVN5boost16exception_detail19error_info_injectorINS_15program_options16validation_errorEEE]+0x20): undefined reference to</code>boost::program_options::error_with_option_name::what() const'<br>
CMakeFiles/mlpack_preprocess_split.dir/preprocess_split_main.cpp.o:(.rodata._ZTVN5boost16exception_detail19error_info_injectorINS_15program_options16validation_errorEEE[_ZTVN5boost16exception_detail19error_info_injectorINS_15program_options16validation_errorEEE]+0x30): undefined reference to <code>boost::program_options::error_with_option_name::substitute_placeholders(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&) const'<br>
CMakeFiles/mlpack_preprocess_split.dir/preprocess_split_main.cpp.o:(.rodata._ZTVN5boost16exception_detail10clone_implINS0_19error_info_injectorINS_15program_options16validation_errorEEEEE[_ZTVN5boost16exception_detail10clone_implINS0_19error_info_injectorINS_15program_options16validation_errorEEEEE]+0x28): undefined reference to</code>boost::program_options::error_with_option_name::what() const'<br>
CMakeFiles/mlpack_preprocess_split.dir/preprocess_split_main.cpp.o:(.rodata._ZTVN5boost16exception_detail10clone_implINS0_19error_info_injectorINS_15program_options16validation_errorEEEEE[_ZTVN5boost16exception_detail10clone_implINS0_19error_info_injectorINS_15program_options16validation_errorEEEEE]+0x38): undefined reference to <code>boost::program_options::error_with_option_name::substitute_placeholders(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&) const'<br>
CMakeFiles/mlpack_preprocess_split.dir/preprocess_split_main.cpp.o:(.rodata._ZTIN5boost15program_options16validation_errorE[_ZTIN5boost15program_options16validation_errorE]+0x10): undefined reference to</code>typeinfo for boost::program_options::error_with_option_name'<br>
CMakeFiles/mlpack_preprocess_split.dir/preprocess_split_main.cpp.o:(.rodata._ZTVN5boost15program_options16validation_errorE[_ZTVN5boost15program_options16validation_errorE]+0x20): undefined reference to <code>boost::program_options::error_with_option_name::what() const'<br>
CMakeFiles/mlpack_preprocess_split.dir/preprocess_split_main.cpp.o:(.rodata._ZTVN5boost15program_options16validation_errorE[_ZTVN5boost15program_options16validation_errorE]+0x30): undefined reference to</code>boost::program_options::error_with_option_name::substitute_placeholders(std::__cxx11::basic_string, std::allocator > const&) const'<br>
CMakeFiles/mlpack_preprocess_split.dir/preprocess_split_main.cpp.o:(.rodata._ZTVN5boost15program_options20invalid_option_valueE[_ZTVN5boost15program_options20invalid_option_valueE]+0x20): undefined reference to <code>boost::program_options::error_with_option_name::what() const'<br>
CMakeFiles/mlpack_preprocess_split.dir/preprocess_split_main.cpp.o:(.rodata._ZTVN5boost15program_options20invalid_option_valueE[_ZTVN5boost15program_options20invalid_option_valueE]+0x30): undefined reference to</code>boost::program_options::error_with_option_name::substitute_placeholders(std::__cxx11::basic_string, std::allocator > const&) const'<br>
CMakeFiles/mlpack_preprocess_split.dir/preprocess_split_main.cpp.o:(.rodata._ZTVN5boost15program_options11typed_valueINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEcEE[_ZTVN5boost15program_options11typed_valueINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEcEE]+0x40): undefined reference to <code>boost::program_options::value_semantic_codecvt_helper<char>::parse(boost::any&, std::vector<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, std::allocator<std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > > > const&, bool) const'<br>
CMakeFiles/mlpack_preprocess_split.dir/preprocess_split_main.cpp.o:(.rodata._ZTVN5boost15program_options11typed_valueIdcEE[_ZTVN5boost15program_options11typed_valueIdcEE]+0x40): undefined reference to</code>boost::program_options::value_semantic_codecvt_helper::parse(boost::any&, std::vector, std::allocator >, std::allocator, std::allocator > > > const&, bool) const'<br>
../../../../lib/libmlpack.so.2.0: undefined reference to <code>boost::program_options::abstract_variables_map::operator[](std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&) const'<br>
../../../../lib/libmlpack.so.2.0: undefined reference to</code>boost::archive::archive_exception::archive_exception(boost::archive::archive_exception const&)'<br>
../../../../lib/libmlpack.so.2.0: undefined reference to <code>boost::archive::basic_xml_oarchive<boost::archive::xml_oarchive>::save_override(boost::archive::class_id_type const&)'<br>
../../../../lib/libmlpack.so.2.0: undefined reference to</code>boost::program_options::detail::cmdline::cmdline(std::vector, std::allocator >, std::allocator, std::allocator > > > const&)'<br>
../../../../lib/libmlpack.so.2.0: undefined reference to <code>boost::program_options::detail::cmdline::get_canonical_option_prefix()'<br>
../../../../lib/libmlpack.so.2.0: undefined reference to</code>boost::program_options::detail::cmdline::set_additional_parser(boost::function1, std::allocator >, std::__cxx11::basic_string, std::allocator > >, std::__cxx11::basic_string, std::allocator > const&>)'<br>
../../../../lib/libmlpack.so.2.0: undefined reference to <code>boost::program_options::options_description::options_description(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&, unsigned int, unsigned int)'<br>
../../../../lib/libmlpack.so.2.0: undefined reference to</code>boost::program_options::to_internal(std::__cxx11::basic_string, std::allocator > const&)'<br>
collect2: error: ld returned 1 exit status<br>
make[2]: *** [bin/mlpack_preprocess_split] Error 1<br>
make[2]: Leaving directory <code>/Users/cwang42/workspace/tools/mlpack-2.0.3/build'<br>
make[1]: *** [src/mlpack/methods/preprocess/CMakeFiles/mlpack_preprocess_split.dir/all] Error 2<br>
make[1]: Leaving directory</code>/Users/cwang42/workspace/tools/mlpack-2.0.3/build'<br>
make: *** [all] Error 2</p>
<p>Thanks a lot,</p>
<p>Chao</p>
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