[mlpack-git] master: merge (32c8a73)
gitdub at mlpack.org
gitdub at mlpack.org
Mon Jul 25 12:18:46 EDT 2016
Repository : https://github.com/mlpack/mlpack
On branch : master
Link : https://github.com/mlpack/mlpack/compare/ecbfd24defe31d9f39708c0b4c6ad352cd46ed5c...7eec0609aa21cb12aeed3cbcaa1e411dad0359f2
>---------------------------------------------------------------
commit 32c8a73c7d905c59795cc284a09cfd9eec38b9d7
Merge: 3b8ffd0 90a5cd2
Author: Keon Kim <kwk236 at gmail.com>
Date: Tue Jun 28 06:41:21 2016 +0900
merge
>---------------------------------------------------------------
32c8a73c7d905c59795cc284a09cfd9eec38b9d7
.gitignore | 5 -
CMakeLists.txt | 2 +-
HISTORY.md | 9 +-
LICENSE.txt | 12 +-
src/mlpack/core.hpp | 2 +-
src/mlpack/core/arma_extend/CMakeLists.txt | 4 -
src/mlpack/core/arma_extend/Mat_extra_bones.hpp | 10 +
src/mlpack/core/arma_extend/Mat_extra_meat.hpp | 10 +
src/mlpack/core/arma_extend/README.md | 23 +
src/mlpack/core/arma_extend/SpMat_extra_bones.hpp | 40 +-
src/mlpack/core/arma_extend/SpMat_extra_meat.hpp | 323 +-----------
src/mlpack/core/arma_extend/arma_extend.hpp | 4 -
src/mlpack/core/arma_extend/fn_ind2sub.hpp | 8 +
src/mlpack/core/arma_extend/hdf5_misc.hpp | 11 +
src/mlpack/core/arma_extend/operator_minus.hpp | 10 +
src/mlpack/core/arma_extend/promote_type.hpp | 50 --
src/mlpack/core/arma_extend/restrictors.hpp | 22 -
src/mlpack/core/arma_extend/traits.hpp | 49 --
src/mlpack/core/arma_extend/typedef.hpp | 30 --
src/mlpack/core/boost_backport/LICENSE.txt | 23 +
src/mlpack/core/boost_backport/README.md | 11 +-
.../unordered_collections_load_imp.hpp | 3 +
.../unordered_collections_save_imp.hpp | 3 +
src/mlpack/core/boost_backport/unordered_map.hpp | 5 +-
src/mlpack/core/data/CMakeLists.txt | 1 +
src/mlpack/core/data/binarize.hpp | 99 ++++
src/mlpack/core/optimizers/lbfgs/lbfgs.hpp | 4 +-
src/mlpack/core/tree/CMakeLists.txt | 10 +
src/mlpack/core/tree/rectangle_tree.hpp | 6 +
.../tree/rectangle_tree/discrete_hilbert_value.hpp | 272 ++++++++++
.../rectangle_tree/discrete_hilbert_value_impl.hpp | 457 +++++++++++++++++
.../tree/rectangle_tree/dual_tree_traverser.hpp | 7 +-
.../rectangle_tree/dual_tree_traverser_impl.hpp | 16 +-
.../hilbert_r_tree_auxiliary_information.hpp | 128 +++++
.../hilbert_r_tree_auxiliary_information_impl.hpp | 169 +++++++
.../hilbert_r_tree_descent_heuristic.hpp | 53 ++
.../hilbert_r_tree_descent_heuristic_impl.hpp | 49 ++
.../tree/rectangle_tree/hilbert_r_tree_split.hpp | 94 ++++
.../rectangle_tree/hilbert_r_tree_split_impl.hpp | 335 +++++++++++++
.../rectangle_tree/no_auxiliary_information.hpp | 117 +++++
.../r_star_tree_descent_heuristic.hpp | 16 +-
.../r_star_tree_descent_heuristic_impl.hpp | 10 +-
.../core/tree/rectangle_tree/r_star_tree_split.hpp | 24 +-
.../tree/rectangle_tree/r_star_tree_split_impl.hpp | 52 +-
.../rectangle_tree/r_tree_descent_heuristic.hpp | 4 +-
.../r_tree_descent_heuristic_impl.hpp | 10 +-
.../core/tree/rectangle_tree/r_tree_split.hpp | 33 +-
.../core/tree/rectangle_tree/r_tree_split_impl.hpp | 59 +--
.../core/tree/rectangle_tree/rectangle_tree.hpp | 54 +-
.../tree/rectangle_tree/rectangle_tree_impl.hpp | 378 ++++++++------
.../tree/rectangle_tree/single_tree_traverser.hpp | 7 +-
.../rectangle_tree/single_tree_traverser_impl.hpp | 16 +-
src/mlpack/core/tree/rectangle_tree/traits.hpp | 7 +-
src/mlpack/core/tree/rectangle_tree/typedef.hpp | 45 +-
.../x_tree_auxiliary_information.hpp | 186 +++++++
.../core/tree/rectangle_tree/x_tree_split.hpp | 61 +--
.../core/tree/rectangle_tree/x_tree_split_impl.hpp | 128 ++---
src/mlpack/core/util/cli.cpp | 57 +--
src/mlpack/core/util/cli.hpp | 18 +-
src/mlpack/core/util/cli_impl.hpp | 45 +-
src/mlpack/methods/ann/ffn.hpp | 24 +-
src/mlpack/methods/ann/rnn.hpp | 20 +-
src/mlpack/methods/cf/cf_main.cpp | 2 +-
src/mlpack/methods/det/det_main.cpp | 2 +-
src/mlpack/methods/emst/emst_main.cpp | 25 +-
src/mlpack/methods/gmm/gmm_generate_main.cpp | 11 +-
src/mlpack/methods/gmm/gmm_probability_main.cpp | 17 +-
src/mlpack/methods/hmm/hmm_generate_main.cpp | 16 +-
src/mlpack/methods/hmm/hmm_train_main.cpp | 7 +-
src/mlpack/methods/hmm/hmm_viterbi_main.cpp | 13 +-
.../hoeffding_trees/hoeffding_tree_main.cpp | 45 +-
src/mlpack/methods/lars/lars_main.cpp | 37 +-
.../linear_regression/linear_regression_main.cpp | 54 +-
src/mlpack/methods/lsh/lsh_main.cpp | 20 +
src/mlpack/methods/lsh/lsh_search.hpp | 12 +
src/mlpack/methods/lsh/lsh_search_impl.hpp | 27 +
src/mlpack/methods/mvu/mvu_main.cpp | 18 +-
src/mlpack/methods/neighbor_search/CMakeLists.txt | 30 +-
src/mlpack/methods/neighbor_search/kfn_main.cpp | 28 +-
src/mlpack/methods/neighbor_search/knn_main.cpp | 14 +-
.../methods/neighbor_search/neighbor_search.hpp | 19 +-
.../neighbor_search/neighbor_search_impl.hpp | 32 +-
.../neighbor_search/neighbor_search_rules.hpp | 4 +
.../neighbor_search/neighbor_search_rules_impl.hpp | 14 +-
src/mlpack/methods/neighbor_search/ns_model.hpp | 231 ++++++++-
.../methods/neighbor_search/ns_model_impl.hpp | 558 ++++++++++-----------
.../sort_policies/furthest_neighbor_sort.cpp | 4 +-
.../sort_policies/furthest_neighbor_sort.hpp | 17 +
.../sort_policies/nearest_neighbor_sort.hpp | 15 +
src/mlpack/methods/pca/pca_main.cpp | 7 +-
src/mlpack/methods/perceptron/perceptron_main.cpp | 15 +-
src/mlpack/methods/preprocess/CMakeLists.txt | 1 +
.../preprocess/preprocess_binarize_main.cpp | 85 ++++
.../methods/preprocess/preprocess_split_main.cpp | 69 +--
src/mlpack/methods/radical/radical_main.cpp | 6 +-
src/mlpack/methods/rann/CMakeLists.txt | 20 +-
.../rann/{allkrann_main.cpp => krann_main.cpp} | 6 +-
src/mlpack/methods/rann/ra_typedef.hpp | 43 +-
.../softmax_regression/softmax_regression_main.cpp | 78 ++-
src/mlpack/tests/CMakeLists.txt | 5 +-
src/mlpack/tests/activation_functions_test.cpp | 2 +-
src/mlpack/tests/ada_delta_test.cpp | 2 +-
src/mlpack/tests/adaboost_test.cpp | 2 +-
src/mlpack/tests/adam_test.cpp | 2 +-
src/mlpack/tests/akfn_test.cpp | 240 +++++++++
src/mlpack/tests/aknn_test.cpp | 400 +++++++++++++++
src/mlpack/tests/arma_extend_test.cpp | 2 +-
src/mlpack/tests/armadillo_svd_test.cpp | 2 +-
src/mlpack/tests/aug_lagrangian_test.cpp | 2 +-
src/mlpack/tests/binarize_test.cpp | 66 +++
src/mlpack/tests/cf_test.cpp | 2 +-
src/mlpack/tests/cli_test.cpp | 2 +-
src/mlpack/tests/convolution_test.cpp | 2 +-
src/mlpack/tests/convolutional_network_test.cpp | 2 +-
src/mlpack/tests/cosine_tree_test.cpp | 2 +-
src/mlpack/tests/decision_stump_test.cpp | 2 +-
src/mlpack/tests/det_test.cpp | 2 +-
src/mlpack/tests/distribution_test.cpp | 2 +-
src/mlpack/tests/emst_test.cpp | 2 +-
src/mlpack/tests/fastmks_test.cpp | 2 +-
src/mlpack/tests/feedforward_network_test.cpp | 2 +-
src/mlpack/tests/gmm_test.cpp | 2 +-
src/mlpack/tests/hmm_test.cpp | 2 +-
src/mlpack/tests/hoeffding_tree_test.cpp | 2 +-
src/mlpack/tests/ind2sub_test.cpp | 2 +-
src/mlpack/tests/init_rules_test.cpp | 2 +-
src/mlpack/tests/kernel_pca_test.cpp | 2 +-
src/mlpack/tests/kernel_test.cpp | 2 +-
src/mlpack/tests/kernel_traits_test.cpp | 2 +-
src/mlpack/tests/kfn_test.cpp | 2 +-
src/mlpack/tests/kmeans_test.cpp | 2 +-
src/mlpack/tests/knn_test.cpp | 6 +-
...krann_search_test.cpp => krann_search_test.cpp} | 12 +-
src/mlpack/tests/lars_test.cpp | 2 +-
src/mlpack/tests/layer_traits_test.cpp | 2 +-
src/mlpack/tests/lbfgs_test.cpp | 2 +-
src/mlpack/tests/lin_alg_test.cpp | 2 +-
src/mlpack/tests/linear_regression_test.cpp | 2 +-
src/mlpack/tests/load_save_test.cpp | 2 +-
src/mlpack/tests/local_coordinate_coding_test.cpp | 2 +-
src/mlpack/tests/log_test.cpp | 2 +-
src/mlpack/tests/logistic_regression_test.cpp | 2 +-
src/mlpack/tests/lrsdp_test.cpp | 2 +-
src/mlpack/tests/lsh_test.cpp | 122 ++++-
src/mlpack/tests/lstm_peephole_test.cpp | 2 +-
src/mlpack/tests/math_test.cpp | 2 +-
src/mlpack/tests/matrix_completion_test.cpp | 2 +-
src/mlpack/tests/maximal_inputs_test.cpp | 2 +-
src/mlpack/tests/mean_shift_test.cpp | 2 +-
src/mlpack/tests/metric_test.cpp | 2 +-
src/mlpack/tests/minibatch_sgd_test.cpp | 2 +-
src/mlpack/tests/mlpack_test.cpp | 2 +-
src/mlpack/tests/nbc_test.cpp | 2 +-
src/mlpack/tests/nca_test.cpp | 2 +-
src/mlpack/tests/network_util_test.cpp | 2 +-
src/mlpack/tests/nmf_test.cpp | 2 +-
src/mlpack/tests/nystroem_method_test.cpp | 2 +-
src/mlpack/tests/pca_test.cpp | 2 +-
src/mlpack/tests/perceptron_test.cpp | 2 +-
src/mlpack/tests/performance_functions_test.cpp | 2 +-
src/mlpack/tests/pooling_rules_test.cpp | 2 +-
src/mlpack/tests/quic_svd_test.cpp | 2 +-
src/mlpack/tests/radical_test.cpp | 2 +-
src/mlpack/tests/range_search_test.cpp | 2 +-
src/mlpack/tests/rectangle_tree_test.cpp | 321 ++++++++++--
src/mlpack/tests/recurrent_network_test.cpp | 2 +-
src/mlpack/tests/regularized_svd_test.cpp | 2 +-
src/mlpack/tests/rmsprop_test.cpp | 2 +-
src/mlpack/tests/sa_test.cpp | 2 +-
src/mlpack/tests/sdp_primal_dual_test.cpp | 2 +-
src/mlpack/tests/serialization.hpp | 2 +-
src/mlpack/tests/serialization_test.cpp | 2 +-
src/mlpack/tests/sgd_test.cpp | 2 +-
src/mlpack/tests/softmax_regression_test.cpp | 2 +-
src/mlpack/tests/sort_policy_test.cpp | 2 +-
src/mlpack/tests/sparse_autoencoder_test.cpp | 2 +-
src/mlpack/tests/sparse_coding_test.cpp | 2 +-
src/mlpack/tests/split_data_test.cpp | 2 +-
src/mlpack/tests/svd_batch_test.cpp | 2 +-
src/mlpack/tests/svd_incremental_test.cpp | 2 +-
src/mlpack/tests/termination_policy_test.cpp | 2 +-
...d_boost_test_definitions.hpp => test_tools.hpp} | 14 +-
src/mlpack/tests/tree_test.cpp | 2 +-
src/mlpack/tests/tree_traits_test.cpp | 2 +-
src/mlpack/tests/union_find_test.cpp | 2 +-
185 files changed, 4866 insertions(+), 1816 deletions(-)
diff --cc src/mlpack/core/data/CMakeLists.txt
index 8252b35,f11f19c..65e4fc3
--- a/src/mlpack/core/data/CMakeLists.txt
+++ b/src/mlpack/core/data/CMakeLists.txt
@@@ -15,7 -15,7 +15,8 @@@ set(SOURCE
save_impl.hpp
serialization_shim.hpp
split_data.hpp
+ imputer.hpp
+ binarize.hpp
)
# add directory name to sources
diff --cc src/mlpack/methods/preprocess/CMakeLists.txt
index 1490341,b10c8ea..0eee8ac
--- a/src/mlpack/methods/preprocess/CMakeLists.txt
+++ b/src/mlpack/methods/preprocess/CMakeLists.txt
@@@ -14,5 -14,6 +14,6 @@@ set(MLPACK_SRCS ${MLPACK_SRCS} ${DIR_SR
#add_cli_executable(preprocess_stats)
add_cli_executable(preprocess_split)
+ add_cli_executable(preprocess_binarize)
#add_cli_executable(preprocess_scan)
-#add_cli_executable(preprocess_imputer)
+add_cli_executable(preprocess_imputer)
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