[mlpack-svn] [MLPACK] #307: Linking problem with boost during build
MLPACK Trac
trac at coffeetalk-1.cc.gatech.edu
Tue Oct 29 16:41:16 EDT 2013
#307: Linking problem with boost during build
--------------------------+-------------------------------------------------
Reporter: Madda | Owner: rcurtin
Type: defect | Status: new
Priority: major | Milestone:
Component: build system | Keywords:
Blocking: | Blocked By:
--------------------------+-------------------------------------------------
Hi,
I am trying to build mlpack-1.0.7, but I am getting linking errors with
boost. There was already a ticket on this topic and the suggestion was to
add -D BOOST_ROOT=/usr/include/ which I did, but I am still getting
problems.
These are the command:
$ sudo cmake -D BOOST_ROOT=/usr/local/ -D
ARMADILLO_INCLUDE_DIR=/usr/local/armadillo-3.920.2/include/ -D
ARMADILLO_LIBRARY=/usr/local/armadillo-3.920.2/libarmadillo.so ../
CMake Warning at CMakeLists.txt:81 (message):
This is a 64-bit system, but Armadillo was compiled without 64-bit index
support. Consider recompiling Armadillo with ARMA_64BIT_WORD to enable
64-bit indices (large matrix support). MLPACK will still work without
ARMA_64BIT_WORD defined, but will not scale to matrices with more than 4
billion elements.
-- Boost version: 1.54.0
-- Found the following Boost libraries:
-- program_options
-- unit_test_framework
-- Boost version: 1.54.0
-- Found the following Boost libraries:
-- random
-- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE)
CMake Warning at CMakeLists.txt:270 (message):
txt2man not found; man pages will not be generated.
-- Configuring done
-- Generating done
-- Build files have been written to: /usr/local/mlpack/mlpack-1.0.7/build
$ sudo make
Scanning dependencies of target mlpack
[ 1%] Building CXX object
src/mlpack/CMakeFiles/mlpack.dir/core/dists/discrete_distribution.cpp.o
[ 2%] Building CXX object
src/mlpack/CMakeFiles/mlpack.dir/core/dists/gaussian_distribution.cpp.o
[ 3%] Building CXX object
src/mlpack/CMakeFiles/mlpack.dir/core/kernels/epanechnikov_kernel.cpp.o
[ 4%] Building CXX object
src/mlpack/CMakeFiles/mlpack.dir/core/kernels/pspectrum_string_kernel.cpp.o
[ 5%] Building CXX object
src/mlpack/CMakeFiles/mlpack.dir/core/math/lin_alg.cpp.o
[ 6%] Building CXX object
src/mlpack/CMakeFiles/mlpack.dir/core/math/random.cpp.o
[ 7%] Building CXX object
src/mlpack/CMakeFiles/mlpack.dir/core/optimizers/aug_lagrangian/aug_lagrangian_test_functions.cpp.o
[ 8%] Building CXX object
src/mlpack/CMakeFiles/mlpack.dir/core/optimizers/lbfgs/test_functions.cpp.o
[ 9%] Building CXX object
src/mlpack/CMakeFiles/mlpack.dir/core/optimizers/sgd/test_function.cpp.o
[ 10%] Building CXX object
src/mlpack/CMakeFiles/mlpack.dir/core/tree/mrkd_statistic.cpp.o
[ 11%] Building CXX object
src/mlpack/CMakeFiles/mlpack.dir/core/util/cli.cpp.o
[ 12%] Building CXX object
src/mlpack/CMakeFiles/mlpack.dir/core/util/cli_deleter.cpp.o
[ 13%] Building CXX object
src/mlpack/CMakeFiles/mlpack.dir/core/util/log.cpp.o
[ 14%] Building CXX object
src/mlpack/CMakeFiles/mlpack.dir/core/util/option.cpp.o
[ 15%] Building CXX object
src/mlpack/CMakeFiles/mlpack.dir/core/util/prefixedoutstream.cpp.o
[ 17%] Building CXX object
src/mlpack/CMakeFiles/mlpack.dir/core/util/save_restore_utility.cpp.o
[ 18%] Building CXX object
src/mlpack/CMakeFiles/mlpack.dir/core/util/string_util.cpp.o
[ 19%] Building CXX object
src/mlpack/CMakeFiles/mlpack.dir/core/util/timers.cpp.o
[ 20%] Building CXX object
src/mlpack/CMakeFiles/mlpack.dir/methods/cf/cf.cpp.o
In file included from
/usr/local/mlpack/mlpack-1.0.7/src/mlpack/../mlpack/methods/neighbor_search/neighbor_search.hpp:254:0,
from
/usr/local/mlpack/mlpack-1.0.7/src/mlpack/methods/cf/cf.hpp:29,
from
/usr/local/mlpack/mlpack-1.0.7/src/mlpack/methods/cf/cf.cpp:26:
/usr/local/mlpack/mlpack-1.0.7/src/mlpack/../mlpack/methods/neighbor_search/neighbor_search_impl.hpp:
In member function ‘void mlpack::neighbor::NeighborSearch<SortPolicy,
MetricType, TreeType>::Search(size_t, arma::Mat<long unsigned int>&,
arma::mat&) [with SortPolicy = mlpack::neighbor::NearestNeighborSort,
MetricType = mlpack::metric::LMetric<2, true>, TreeType =
mlpack::tree::BinarySpaceTree<mlpack::bound::HRectBound<2>,
mlpack::neighbor::NeighborSearchStat<mlpack::neighbor::NearestNeighborSort>,
arma::Mat<double> >, size_t = long unsigned int, arma::mat =
arma::Mat<double>]’:
/usr/local/mlpack/mlpack-1.0.7/src/mlpack/methods/cf/cf.cpp:144:67:
instantiated from here
/usr/local/mlpack/mlpack-1.0.7/src/mlpack/../mlpack/methods/neighbor_search/neighbor_search_impl.hpp:205:10:
warning: unused variable ‘numPrunes’ [-Wunused-variable]
[ 21%] Building CXX object
src/mlpack/CMakeFiles/mlpack.dir/methods/det/dtree.cpp.o
/usr/local/mlpack/mlpack-1.0.7/src/mlpack/methods/det/dtree.cpp:143:6:
warning: unused parameter ‘maxLeafSize’ [-Wunused-parameter]
[ 22%] Building CXX object
src/mlpack/CMakeFiles/mlpack.dir/methods/det/dt_utils.cpp.o
[ 23%] Building CXX object
src/mlpack/CMakeFiles/mlpack.dir/methods/lars/lars.cpp.o
[ 24%] Building CXX object
src/mlpack/CMakeFiles/mlpack.dir/methods/linear_regression/linear_regression.cpp.o
[ 25%] Building CXX object
src/mlpack/CMakeFiles/mlpack.dir/methods/neighbor_search/sort_policies/nearest_neighbor_sort.cpp.o
[ 26%] Building CXX object
src/mlpack/CMakeFiles/mlpack.dir/methods/neighbor_search/sort_policies/furthest_neighbor_sort.cpp.o
[ 27%] Building CXX object
src/mlpack/CMakeFiles/mlpack.dir/methods/neighbor_search/unmap.cpp.o
[ 28%] Building CXX object
src/mlpack/CMakeFiles/mlpack.dir/methods/pca/pca.cpp.o
[ 29%] Building CXX object
src/mlpack/CMakeFiles/mlpack.dir/methods/radical/radical.cpp.o
Linking CXX shared library ../../lib/libmlpack.so
Moving header files to include/mlpack/
[ 29%] Built target mlpack
Scanning dependencies of target cf
[ 30%] Building CXX object
src/mlpack/methods/cf/CMakeFiles/cf.dir/cf_main.cpp.o
Linking CXX executable ../../../../bin/cf
CMakeFiles/cf.dir/cf_main.cpp.o: In function
`boost::program_options::validation_error::validation_error(boost::program_options::validation_error::kind_t,
std::basic_string<char, std::char_traits<char>, std::allocator<char> >
const&, std::basic_string<char, std::char_traits<char>,
std::allocator<char> > const&, int)':
cf_main.cpp:(.text._ZN5boost15program_options16validation_errorC2ENS1_6kind_tERKSsS4_i[_ZN5boost15program_options16validation_errorC5ENS1_6kind_tERKSsS4_i]+0x2c):
undefined reference to
`boost::program_options::validation_error::get_template(boost::program_options::validation_error::kind_t)'
cf_main.cpp:(.text._ZN5boost15program_options16validation_errorC2ENS1_6kind_tERKSsS4_i[_ZN5boost15program_options16validation_errorC5ENS1_6kind_tERKSsS4_i]+0x44):
undefined reference to
`boost::program_options::error_with_option_name::error_with_option_name(std::basic_string<char,
std::char_traits<char>, std::allocator<char> > const&,
std::basic_string<char, std::char_traits<char>, std::allocator<char> >
const&, std::basic_string<char, std::char_traits<char>,
std::allocator<char> > const&, int)'
CMakeFiles/cf.dir/cf_main.cpp.o: In function
`boost::program_options::error_with_option_name::~error_with_option_name()':
cf_main.cpp:(.text._ZN5boost15program_options22error_with_option_nameD2Ev[_ZN5boost15program_options22error_with_option_nameD5Ev]+0x7):
undefined reference to `vtable for
boost::program_options::error_with_option_name'
CMakeFiles/cf.dir/cf_main.cpp.o: In function
`boost::program_options::validation_error::~validation_error()':
cf_main.cpp:(.text._ZN5boost15program_options16validation_errorD2Ev[_ZN5boost15program_options16validation_errorD5Ev]+0x7):
undefined reference to `vtable for
boost::program_options::error_with_option_name'
CMakeFiles/cf.dir/cf_main.cpp.o: In function
`boost::program_options::error_with_option_name::~error_with_option_name()':
cf_main.cpp:(.text._ZN5boost15program_options22error_with_option_nameD0Ev[_ZN5boost15program_options22error_with_option_nameD5Ev]+0x7):
undefined reference to `vtable for
boost::program_options::error_with_option_name'
CMakeFiles/cf.dir/cf_main.cpp.o: In function
`boost::program_options::invalid_option_value::~invalid_option_value()':
cf_main.cpp:(.text._ZN5boost15program_options20invalid_option_valueD0Ev[_ZN5boost15program_options20invalid_option_valueD5Ev]+0x7):
undefined reference to `vtable for
boost::program_options::error_with_option_name'
CMakeFiles/cf.dir/cf_main.cpp.o: In function
`boost::program_options::invalid_option_value::~invalid_option_value()':
cf_main.cpp:(.text._ZN5boost15program_options20invalid_option_valueD2Ev[_ZN5boost15program_options20invalid_option_valueD5Ev]+0x7):
undefined reference to `vtable for
boost::program_options::error_with_option_name'
CMakeFiles/cf.dir/cf_main.cpp.o:cf_main.cpp:(.text._ZN5boost16exception_detail19error_info_injectorINS_15program_options16validation_errorEED2Ev[_ZN5boost16exception_detail19error_info_injectorINS_15program_options16validation_errorEED5Ev]+0x2c):
more undefined references to `vtable for
boost::program_options::error_with_option_name' follow
CMakeFiles/cf.dir/cf_main.cpp.o:(.rodata._ZTVN5boost15program_options16validation_errorE[vtable
for boost::program_options::validation_error]+0x20): undefined reference
to `boost::program_options::error_with_option_name::what() const'
CMakeFiles/cf.dir/cf_main.cpp.o:(.rodata._ZTVN5boost15program_options16validation_errorE[vtable
for boost::program_options::validation_error]+0x30): undefined reference
to
`boost::program_options::error_with_option_name::substitute_placeholders(std::basic_string<char,
std::char_traits<char>, std::allocator<char> > const&) const'
CMakeFiles/cf.dir/cf_main.cpp.o:(.rodata._ZTVN5boost16exception_detail19error_info_injectorINS_15program_options16validation_errorEEE[vtable
for
boost::exception_detail::error_info_injector<boost::program_options::validation_error>]+0x20):
undefined reference to
`boost::program_options::error_with_option_name::what() const'
CMakeFiles/cf.dir/cf_main.cpp.o:(.rodata._ZTVN5boost16exception_detail19error_info_injectorINS_15program_options16validation_errorEEE[vtable
for
boost::exception_detail::error_info_injector<boost::program_options::validation_error>]+0x30):
undefined reference to
`boost::program_options::error_with_option_name::substitute_placeholders(std::basic_string<char,
std::char_traits<char>, std::allocator<char> > const&) const'
CMakeFiles/cf.dir/cf_main.cpp.o:(.rodata._ZTVN5boost16exception_detail10clone_implINS0_19error_info_injectorINS_15program_options16validation_errorEEEEE[vtable
for
boost::exception_detail::clone_impl<boost::exception_detail::error_info_injector<boost::program_options::validation_error>
>]+0x28): undefined reference to
`boost::program_options::error_with_option_name::what() const'
CMakeFiles/cf.dir/cf_main.cpp.o:(.rodata._ZTVN5boost16exception_detail10clone_implINS0_19error_info_injectorINS_15program_options16validation_errorEEEEE[vtable
for
boost::exception_detail::clone_impl<boost::exception_detail::error_info_injector<boost::program_options::validation_error>
>]+0x38): undefined reference to
`boost::program_options::error_with_option_name::substitute_placeholders(std::basic_string<char,
std::char_traits<char>, std::allocator<char> > const&) const'
CMakeFiles/cf.dir/cf_main.cpp.o:(.rodata._ZTVN5boost15program_options20invalid_option_valueE[vtable
for boost::program_options::invalid_option_value]+0x20): undefined
reference to `boost::program_options::error_with_option_name::what()
const'
CMakeFiles/cf.dir/cf_main.cpp.o:(.rodata._ZTVN5boost15program_options20invalid_option_valueE[vtable
for boost::program_options::invalid_option_value]+0x30): undefined
reference to
`boost::program_options::error_with_option_name::substitute_placeholders(std::basic_string<char,
std::char_traits<char>, std::allocator<char> > const&) const'
CMakeFiles/cf.dir/cf_main.cpp.o:(.rodata._ZTVN5boost16exception_detail19error_info_injectorINS_15program_options20invalid_option_valueEEE[vtable
for
boost::exception_detail::error_info_injector<boost::program_options::invalid_option_value>]+0x20):
undefined reference to
`boost::program_options::error_with_option_name::what() const'
CMakeFiles/cf.dir/cf_main.cpp.o:(.rodata._ZTVN5boost16exception_detail19error_info_injectorINS_15program_options20invalid_option_valueEEE[vtable
for
boost::exception_detail::error_info_injector<boost::program_options::invalid_option_value>]+0x30):
undefined reference to
`boost::program_options::error_with_option_name::substitute_placeholders(std::basic_string<char,
std::char_traits<char>, std::allocator<char> > const&) const'
CMakeFiles/cf.dir/cf_main.cpp.o:(.rodata._ZTVN5boost16exception_detail10clone_implINS0_19error_info_injectorINS_15program_options20invalid_option_valueEEEEE[vtable
for
boost::exception_detail::clone_impl<boost::exception_detail::error_info_injector<boost::program_options::invalid_option_value>
>]+0x28): undefined reference to
`boost::program_options::error_with_option_name::what() const'
CMakeFiles/cf.dir/cf_main.cpp.o:(.rodata._ZTVN5boost16exception_detail10clone_implINS0_19error_info_injectorINS_15program_options20invalid_option_valueEEEEE[vtable
for
boost::exception_detail::clone_impl<boost::exception_detail::error_info_injector<boost::program_options::invalid_option_value>
>]+0x38): undefined reference to
`boost::program_options::error_with_option_name::substitute_placeholders(std::basic_string<char,
std::char_traits<char>, std::allocator<char> > const&) const'
CMakeFiles/cf.dir/cf_main.cpp.o:(.rodata._ZTIN5boost15program_options16validation_errorE[typeinfo
for boost::program_options::validation_error]+0x10): undefined reference
to `typeinfo for boost::program_options::error_with_option_name'
../../../../lib/libmlpack.so.1.0: undefined reference to
`boost::program_options::detail::cmdline::get_canonical_option_prefix()'
collect2: ld returned 1 exit status
make[2]: *** [bin/cf] Error 1
make[1]: *** [src/mlpack/methods/cf/CMakeFiles/cf.dir/all] Error 2
make: *** [all] Error 2
I hope ypu can help me.
Best,
Madda
--
Ticket URL: <http://trac.research.cc.gatech.edu/fastlab/ticket/307>
MLPACK <www.fast-lab.org>
MLPACK is an intuitive, fast, and scalable C++ machine learning library developed at Georgia Tech.
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