[mlpack-svn] r12704 - mlpack/conf/packages/mlpack/branches/1.0.X/debian/patches

[fastlab-svn at coffeetalk-1.cc.gatech.edu]

Author: speet3
Date: 2012-05-17 12:36:07 -0400 (Thu, 17 May 2012)
New Revision: 12704

Added:
   mlpack/conf/packages/mlpack/branches/1.0.X/debian/patches/get_kernel_matrix.patch
Modified:
   mlpack/conf/packages/mlpack/branches/1.0.X/debian/patches/series
Log:
add patch to get mlpack package building on sid amd64

Added: mlpack/conf/packages/mlpack/branches/1.0.X/debian/patches/get_kernel_matrix.patch
===================================================================
--- mlpack/conf/packages/mlpack/branches/1.0.X/debian/patches/get_kernel_matrix.patch	                        (rev 0)
+++ mlpack/conf/packages/mlpack/branches/1.0.X/debian/patches/get_kernel_matrix.patch	2012-05-17 16:36:07 UTC (rev 12704)
@@ -0,0 +1,50 @@
+--- a/src/mlpack/methods/kernel_pca/kernel_pca_impl.hpp
++++ b/src/mlpack/methods/kernel_pca/kernel_pca_impl.hpp
+@@ -17,6 +17,24 @@
+ namespace kpca {
+ 
+ template <typename KernelType>
++arma::mat GetKernelMatrix(KernelType kernel, arma::mat transData)
++{
++  arma::mat kernelMat(transData.n_rows, transData.n_rows);
++
++  for (size_t i = 0; i < transData.n_rows; i++)
++  {
++    for (size_t j = 0; j < transData.n_rows; j++)
++    {
++      arma::vec v1 = trans(transData.row(i));
++      arma::vec v2 = trans(transData.row(j));
++      kernelMat(i, j) = kernel.Evaluate(v1, v2);
++    }
++  }
++
++  return kernelMat;
++}
++
++template <typename KernelType>
+ KernelPCA<KernelType>::KernelPCA(const KernelType kernel,
+                                  const bool centerData,
+                                  const bool scaleData) :
+@@ -112,22 +130,4 @@
+ }; // namespace mlpack
+ }; // namespace kpca
+ 
+-template <typename KernelType>
+-arma::mat GetKernelMatrix(KernelType kernel, arma::mat transData)
+-{
+-  arma::mat kernelMat(transData.n_rows, transData.n_rows);
+-
+-  for (size_t i = 0; i < transData.n_rows; i++)
+-  {
+-    for (size_t j = 0; j < transData.n_rows; j++)
+-    {
+-      arma::vec v1 = trans(transData.row(i));
+-      arma::vec v2 = trans(transData.row(j));
+-      kernelMat(i, j) = kernel.Evaluate(v1, v2);
+-    }
+-  }
+-
+-  return kernelMat;
+-}
+-
+ #endif

Modified: mlpack/conf/packages/mlpack/branches/1.0.X/debian/patches/series
===================================================================
--- mlpack/conf/packages/mlpack/branches/1.0.X/debian/patches/series	2012-05-17 16:10:25 UTC (rev 12703)
+++ mlpack/conf/packages/mlpack/branches/1.0.X/debian/patches/series	2012-05-17 16:36:07 UTC (rev 12704)
@@ -1,4 +1,5 @@
 fully_qualified_as_scalar.patch
+get_kernel_matrix.patch
 build-Doxygen.patch
 no-debug-or-profiling-info.patch
 require-manpage-generation.patch